- General Secretary
- Auditor
- Rectorate Private Secretary Directorate
- Registrar's Office Directorate
- Information Technologies Directorate
- Human Resources Directorate
- Institutional Operations Directorate
- Library and Documentation Directorate
- Financial Affairs and Planning Directorate
- Student Development, Events and Sports Affairs Directorate
- Construction, Project and Infrastructure Management Directorate
- Promotion and Marketing Directorate
- Environment Affairs Unit
- Security Affairs Unit
- Statistics and Data Analysis Unit
- Control Unit
- Institutional Communication and Media Relations Unit
- Purchasing and Tender Unit
- Cleaning Services Unit
- Transportation Services Unit
- Dormitory, Accommodation and Guesthouse Services Unit
- Alumni and Career Development Unit
- Design and Printing Services Unit
- Health Center
- EMU TV and Digital Broadcasting Center
- Institutional Development & International Academic Affairs Office (IDIAAO)
